Index

_

__init__() (cnotebook.c3d.C3D method) (cnotebook.c3d.convert.MapData method) (cnotebook.c3d.convert.MoleculeData method) (cnotebook.CNotebookEnvInfo method) (cnotebook.context.CNotebookContext method) (cnotebook.context.DeferredValue method) (cnotebook.LevelSpecificFormatter method)

A

add_callback() (cnotebook.context.CNotebookContext method) add_design_unit() (cnotebook.c3d.C3D method) add_design_units() (cnotebook.c3d.C3D method) add_isosurface() (cnotebook.c3d.C3D method) add_map() (cnotebook.c3d.C3D method) add_molecule() (cnotebook.c3d.C3D method)

add_molecules() (cnotebook.c3d.C3D method) add_style() (cnotebook.c3d.C3D method) add_surface() (cnotebook.c3d.C3D method) align_depictions() (Series.chem method) as_molecule() (DataFrame.chem method) atom_label_font_scale (cnotebook.context.CNotebookContext property)

B

bond_width_scaling (cnotebook.context.CNotebookContext property)

built-in function molgrid()

C

C3D (class in cnotebook.c3d) c3d_available (cnotebook.CNotebookEnvInfo property) callbacks (cnotebook.context.CNotebookContext property) cnotebook module cnotebook.c3d module cnotebook.c3d.convert module cnotebook.context module

cnotebook.render module cnotebook_context (in module cnotebook) CNotebookContext (class in cnotebook.context) CNotebookEnvInfo (class in cnotebook) convert_design_unit() (in module cnotebook.c3d.convert) convert_map() (in module cnotebook.c3d.convert) convert_molecule() (in module cnotebook.c3d.convert) copy() (cnotebook.context.CNotebookContext method) create_img_tag() (in module cnotebook.render) create_local_context() (in module cnotebook.context) create_molecule_display() (cnotebook.context.CNotebookContext method)

D

data (cnotebook.c3d.convert.MapData attribute) (cnotebook.c3d.convert.MoleculeData attribute) DEBUG_FORMAT (cnotebook.LevelSpecificFormatter attribute) DeferredValue (class in cnotebook.context)

disabled (cnotebook.c3d.convert.MoleculeData attribute) display() (cnotebook.c3d.C3D method) (in module cnotebook) (MolGrid method) display_options (cnotebook.context.CNotebookContext property)

E

enable_debugging() (in module cnotebook)

encoding (cnotebook.c3d.convert.MapData attribute)

F

fingerprint_similarity() (DataFrame.chem method) format (cnotebook.c3d.convert.MapData attribute) (cnotebook.c3d.convert.MoleculeData attribute)

format() (cnotebook.LevelSpecificFormatter method)

G

get() (cnotebook.context.DeferredValue method) get_env() (in module cnotebook)

get_selection() (MolGrid method) get_selection_indices() (MolGrid method) get_series_context() (in module cnotebook.context)

H

height (cnotebook.context.CNotebookContext property) hide_nonpolar_hydrogens() (cnotebook.c3d.C3D method)

hide_style() (cnotebook.c3d.C3D method) highlight() (Series.chem method) highlight_using_column() (DataFrame.chem method)

I

image_format (cnotebook.context.CNotebookContext property) image_mime_type (cnotebook.context.CNotebookContext property) ipython_available (cnotebook.CNotebookEnvInfo property)

ipython_version (cnotebook.CNotebookEnvInfo property) is_deferred (cnotebook.context.DeferredValue property) is_jupyter_notebook (cnotebook.CNotebookEnvInfo property) is_marimo_notebook (cnotebook.CNotebookEnvInfo property)

L

LevelSpecificFormatter (class in cnotebook)

M

MapData (class in cnotebook.c3d.convert) marimo_available (cnotebook.CNotebookEnvInfo property) marimo_version (cnotebook.CNotebookEnvInfo property) max_heavy_atoms (cnotebook.context.CNotebookContext property) max_height (cnotebook.context.CNotebookContext property) max_width (cnotebook.context.CNotebookContext property) min_height (cnotebook.context.CNotebookContext property) min_width (cnotebook.context.CNotebookContext property) module cnotebook cnotebook.c3d cnotebook.c3d.convert cnotebook.context cnotebook.render

MoleculeData (class in cnotebook.c3d.convert) MolGrid (built-in class) molgrid() built-in function molgrid() (DataFrame.chem method) (Series.chem method) molgrid_available (cnotebook.CNotebookEnvInfo property)

N

name (cnotebook.c3d.convert.MapData attribute) (cnotebook.c3d.convert.MoleculeData attribute)

NORMAL_FORMAT (cnotebook.LevelSpecificFormatter attribute) num_atoms (cnotebook.c3d.convert.MoleculeData attribute)

O

oedisp_to_html() (in module cnotebook.render) oedu_to_disp() (in module cnotebook.render) oedu_to_html() (in module cnotebook.render) oedu_to_image() (in module cnotebook.render)

oeimage_to_html() (in module cnotebook.render) oemol_to_disp() (in module cnotebook.render) oemol_to_html() (in module cnotebook.render) oemol_to_image() (in module cnotebook.render) orient() (cnotebook.c3d.C3D method)

P

pandas_available (cnotebook.CNotebookEnvInfo property) pandas_version (cnotebook.CNotebookEnvInfo property)

pass_cnotebook_context() (in module cnotebook.context) polars_available (cnotebook.CNotebookEnvInfo property) polars_version (cnotebook.CNotebookEnvInfo property)

R

remove_isosurface() (cnotebook.c3d.C3D method) remove_map() (cnotebook.c3d.C3D method) remove_style() (cnotebook.c3d.C3D method) remove_surface() (cnotebook.c3d.C3D method) render_empty_molecule() (in module cnotebook.render)

render_exceeds_max_heavy_atoms() (in module cnotebook.render) render_invalid_molecule() (in module cnotebook.render) reset() (cnotebook.context.CNotebookContext method) (cnotebook.context.DeferredValue method) reset_callbacks() (cnotebook.context.CNotebookContext method)

S

scope (cnotebook.context.CNotebookContext property) set() (cnotebook.context.DeferredValue method) set_background() (cnotebook.c3d.C3D method) set_color() (cnotebook.c3d.C3D method) set_preset() (cnotebook.c3d.C3D method) set_render_options() (DataFrame.chem method) (Series.chem method)

set_theme() (cnotebook.c3d.C3D method) set_ui() (cnotebook.c3d.C3D method) show_polar_hydrogens() (cnotebook.c3d.C3D method) show_style() (cnotebook.c3d.C3D method) source_type (cnotebook.c3d.convert.MoleculeData attribute) structure_scale (cnotebook.context.CNotebookContext property) supported_mime_types (cnotebook.context.CNotebookContext attribute)

T

title (cnotebook.context.CNotebookContext property) title_font_scale (cnotebook.context.CNotebookContext property)

to_html() (cnotebook.c3d.C3D method) (MolGrid method)

W

width (cnotebook.context.CNotebookContext property)

Z

zoom_to() (cnotebook.c3d.C3D method)